Photos
 About BSB
 About IWGD
 Bioinformatics Course
 Registration
 Venue
 Program
 Invited Speakers
 Technical Sessions
 BSB Posters
 Program Committee
 Organization
Promoted by:
Sponsor:
Angra dos Reis, Rio de Janeiro, Brazil August 29-31, 2007
 
  TECHNICAL SESSIONS
 

BSB2007 proceedings (ISBN: 978-3-540-73730-8) are published in the
Springer LNBI series - Lecture Notes in Bioinformatics, LNBI 4643 -
also at DBLP - Computer Science Bibliography.

 
 

Technical Session 1
- chair: Célia Ghedini Ralha

 

Full Papers

  • New EST Trimming Procedure Applied to SUCEST Sequences
    Christian Baudet, Zanoni Dias
    University of Campinas
    (Brasil)
 
  • A Method for Inferring Biological Functions Using Homologous Genes Among Three Genomes
    Daniel Arruda Santos Anjos, Gustavo Guerra Zerlotini, Guilherme Albuquerque Pinto, Maria Emilia M. T. Walter, Marcelo de Macedo Brígido, Guilherme Pimentel Telles, Carlos Juliando Viana, Nalvo Franco Almeida Jr.
    University of Brasilia
    University of São Paulo/São Carlos Federal
    University of Mato Grosso do Sul
    (Brasil)
 
  • An Optimized Distance Function for Comparison of Protein Binding Sites
    Gábor Iván
    Eotvos Lorand University
    (Hungary)
 

Extended Abstracts

  • Mapping Contigs onto Reference Genomes
    Nalvo Franco Almeida Jr., André Chastel, Said Adi, Carlos Juliano Viana, Marcel Yugo Nakazaki, Andrey Tamura, Luciana Hiratsuka,Leandro Brazil
    Federal University of Mato Grosso do Sul
    University of São Paulo
    (Brasil)
 
  • Cellular Fingerprints: a Novel Concept for the Integration of Experimental Data and Compound-target Relations
    Stefan Gunther, Stefanie Neumann, Jessica Ahmed, Robert Preissner
    Charité/Berlin University
    (Germany)

Technical Session 2
- chair: Alba Cristina M. Alves de Melo

 

Full Papers

  • Comparison of Simple Encoding Schemes in GAs for the Motif Finding Problem: Preliminary Results
    Giovanna Martinez-Arellano, Carlos A. Brizuela
    Computer Sciences Department/CICESE Research Center
    (Mexico)
 
  • Multi-objective Clustering Ensemble with Prior Knowledge
    Katti Faceli, André C. P. L. F. de Carvalho, Marcílio C. P. de Souto
    University of São Paulo/São Carlos Federal
    University of Rio Grande do Norte
    (Brasil)
 
  • Comparing RNA Structures: Towards an Intermediate Model Between the EDIT and the LAPCS Problems
    Guillaume Blin, Guillaume Fertin, Gael Herry, Stephane Vialette
    University of Marne-la-Vallée
    University of Nantes
    University of Paris-Sud
    (France)
 

Extended Abstracts

  • A Genetic Algorithm for Finding Multiple Low Energy Conformation of Poly Alanine Sequences under an Atomistic Protein
    Fábio Lima Custódio, Hélio J. C. Barbosa, Laurent E. Dardenne
    Laboratório Nacional de Computação Científica (LNCC)/MCT
    (Brasil)
 
  • Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines
    Roberto Ternes Arrial, Marcelo de Macedo Brígido, Roberto Togawa
    University of Brasilia
    Embrapa/Genetic Resources and Biotechnology
    (Brasil)

Technical Session 3
- chair: Natália Florêncio Martins

 

Full Papers

  • High Efficiency on Prediction of Translation Initiation Site (TIS) of RefSeq Sequences
    Cristiane Neri Nobre, J. Miguel Ortega, Antonio Padua Braga
    Pontifical Catholic University of Minas Gerais
    Federal University of Minas Gerais
    (Brasil)
 
  • Gene Set Enrichment Analysis Using Non-parametric Scores
    Ariel E. Bayá, Mônica Larese, Pablo Granitto, Juan Carlos Gómez,Elizabeth Tapia
    Conicet - Instituto de Fisica Rosario
    Universidad Nacional de Rosario
    (Argentina)
 
  • Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information
    Ivan G. Costa, Marcílio C. P. de Souto, Alexander Schliep
    Max Planck Institute for Molecular Genetics
    (Alemanha)
    Federal University of Rio Grande do Norte
    (Brasil)
 

Extended Abstracts

  • Molecular Dynamics Simulations of Cruzipains 1 and 2 at Different Temperatures
    Priscila V. S. Z. Capriles, Laurent E. Dardenne
    Laboratório Nacional de Computação Científica (LNCC)/MCT
    (Brasil)
 
  • Identification of Putative Class 3 R Genes in Coffea arabica From CafEST-database
    Magnólia A. Campos, Flávia Barbosa Silva, Marília Santos Silva, Érika V. S. Albuquerque, Alexandre M. do Amaral, Cristiane C. Teixeira,Ângela Mehta, Maria Fátima Grossi de Sá
    Federal University of Lavras
    Embrapa/Cerrados
    Embrapa/Genetic Resources and Biotechnology
    (Brasil)

Technical Session 4
- chair: José Carlos Mombach

 

Full Papers

  • Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms
    Marcelo Nardelli Pinto Santana, Alba C. M. Alves de Melo
    University of Brasilia
    (Brasil)
 
  • Comparing Several Approaches for Hierarchical Classification of Proteins with Decision Trees
    Eduardo Costa, Ana Carolina Lorena, André C. P. L. F. de Carvalho, Alex Freitas, Nicholas Holden
    University of São Paulo/São Carlos
    (Brasil)

    University of Kent
    (England)
 
  • Evolving Phylogenetic Trees: a Multiobjective Approach
    Guilherme Palermo Coelho, Ana Estela Antunes Silva, Fernando Von Zuben
    State University of Campinas (Unicamp)
    Methodist University of Piracicaba (UNIMEP)
    (Brasil)
 
  • Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows
    Karina Machado, Evelyn Schroeder, Duncan Ruiz,Osmar Norberto de Souza
    Pontifícia Universidade Católica do Rio Grande do Sul - PUCRS
    (Brasil)
 
Top